PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn324431
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 248aa    MW: 28042.3 Da    PI: 5.1046
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn324431genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.61.6e-214699356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k++++t+eql +Le+ Fe ++++  e++++LAkklg++ rqV vWFqNrRa++k
  Achn324431 46 KKRRLTPEQLLVLEKSFEGENKLEPERKTQLAKKLGMQPRQVAVWFQNRRARWK 99
                5678*************************************************9 PP
2HD-ZIP_I/II1247.1e-4045134190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  ekkrrl+ eq+ +LE+sFe e+kLeperK++la++Lg+qprqvavWFqnrRAR+ktkqlE+dy +L+++y++l ++ ++++k++++L++e
   Achn324431  45 EKKRRLTPEQLLVLEKSFEGENKLEPERKTQLAKKLGMQPRQVAVWFQNRRARWKTKQLERDYGHLQSSYKSLLSKYDSIRKDNDKLKAE 134
                  69*************************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.52441101IPR001356Homeobox domain
SMARTSM003893.9E-2044105IPR001356Homeobox domain
SuperFamilySSF466891.0E-1946112IPR009057Homeodomain-like
PfamPF000468.3E-194699IPR001356Homeobox domain
CDDcd000861.76E-1846102No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2147108IPR009057Homeodomain-like
PRINTSPR000317.2E-67281IPR000047Helix-turn-helix motif
PROSITE patternPS0002707699IPR017970Homeobox, conserved site
PRINTSPR000317.2E-68197IPR000047Helix-turn-helix motif
PfamPF021832.8E-13101139IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MFFIGTGDSV FRGPRSVVNM EETFKRRSFF SLADELFDDD QQLPEKKRRL TPEQLLVLEK  60
SFEGENKLEP ERKTQLAKKL GMQPRQVAVW FQNRRARWKT KQLERDYGHL QSSYKSLLSK  120
YDSIRKDNDK LKAEHVNLTV VGLQVVSLTE KLKAKEVAGA PKSDPFLEDV AHAKMEDRLS  180
SGSDGSAVVD SSDSYFPNGD YVGLLDVVQS EVEDGSDDGR SYFSDVFAAA EGQNHQEGEQ  240
LGLWVWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193101RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278872.11e-100PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022832e-77HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2R6RTP41e-164A0A2R6RTP4_ACTCH; Homeobox-leucine zipper protein
STRINGVIT_14s0066g01440.t011e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-63homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]