PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn324471
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25682.3 Da    PI: 7.7156
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn324471genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85.2e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k ie+ks rqvtfskRr g++KKA ELSvLCd+e+a+ +fs +g+lye++s
  Achn324471  9 KAIEDKSSRQVTFSKRRSGLMKKARELSVLCDVEIALFVFSGRGRLYEFCS 59
                68***********************************************96 PP
2K-box20.91.5e-0881159987
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                  + +++++l++ +  L k ++ Lq   R +   ++e+L++ eL qLe++L++ l++ R +K+++ ++++ +  +k  ++
  Achn324471  81 RSVQESKKLHEGSMDLWKGTNLLQIVERLYEELKVEQLDVTELTQLEHRLNSILQQTRIRKSQITMKHVTDFYEKIAAM 159
                 455666788888888888889999988888888899********************************99988776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.506161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-35160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-29276IPR002100Transcription factor, MADS-box
CDDcd002658.37E-38271No hitNo description
PRINTSPR004046.8E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009910Biological Processnegative regulation of flower development
GO:0010221Biological Processnegative regulation of vernalization response
GO:0048587Biological Processregulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGRRKIALKA IEDKSSRQVT FSKRRSGLMK KARELSVLCD VEIALFVFSG RGRLYEFCSG  60
DSLKRILERY QIHEDAEDTG RSVQESKKLH EGSMDLWKGT NLLQIVERLY EELKVEQLDV  120
TELTQLEHRL NSILQQTRIR KSQITMKHVT DFYEKIAAMI NEAAVDDWFS CRHLHDDHHQ  180
PPWQDPVVNQ EVYAYGSTSN SIVPVAPHHQ GAMFYNIAAL KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-19170169Myocyte-specific enhancer factor 2B
1tqe_Q7e-19170169Myocyte-specific enhancer factor 2B
1tqe_R7e-19170169Myocyte-specific enhancer factor 2B
1tqe_S7e-19170169Myocyte-specific enhancer factor 2B
6c9l_A7e-19170169Myocyte-specific enhancer factor 2B
6c9l_B7e-19170169Myocyte-specific enhancer factor 2B
6c9l_C7e-19170169Myocyte-specific enhancer factor 2B
6c9l_D7e-19170169Myocyte-specific enhancer factor 2B
6c9l_E7e-19170169Myocyte-specific enhancer factor 2B
6c9l_F7e-19170169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107381.11e-78truncated transcription factor CAULIFLOWER A-like
TrEMBLI6ZX144e-76I6ZX14_CAMSI; MADS-box domain protein
STRINGEOY028371e-51(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.48e-37MIKC_MADS family protein