PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn326311
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 708aa    MW: 77622.9 Da    PI: 5.6762
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn326311genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-1955110156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r++ +++t++q++e+e++F+++++p+ ++r+eL ++l+L+  qVk+WFqN+R+++k
  Achn326311  55 RKRYHRHTQHQIQEMESFFKECPHPDDKQRKELGRRLDLEPLQVKFWFQNKRTQMK 110
                 789999***********************************************998 PP
2START208.82.1e-652404491206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++e++++a+++ep+Wv+s+    e + ++e+ ++f+++ +      ++ea+r+s+vv+m++++lve+l+d++ qW + +     +a t+ev+s
  Achn326311 240 ELAVAAMEEVIRMAQSGEPLWVSSPgnstEALSEEEYFRTFPRGIGpkplgLKSEASRESAVVIMNHVNLVEILMDVS-QWANVFSgivsRAVTMEVLS 337
                 57899**********************9999************999********************************.******************** PP

                 TTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHH CS
       START  87 sggalqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrsl 184
                 +g     m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ +    v R++++pSg+li++++ng+skvtwvehv++++r +h+l+r+l
  Achn326311 338 TG-----MTAEYQVPSPLVPtRENYFVRYCKQHADGTWAVVDVSLDNLRPSS----VSRCRRRPSGCLIQEVPNGYSKVTWVEHVEVDDRAVHSLYRPL 427
                 *9.....88999************************************9965....8****************************************** PP

                 HHHHHHHHHHHHHHHTXXXXXX CS
       START 185 vksglaegaktwvatlqrqcek 206
                 v+sgla+gak+wvatl+rqce+
  Achn326311 428 VNSGLAFGAKRWVATLDRQCER 449
                 ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-2138110IPR009057Homeodomain-like
SuperFamilySSF466896.27E-1938111IPR009057Homeodomain-like
PROSITE profilePS5007116.43952112IPR001356Homeobox domain
SMARTSM003891.8E-1653116IPR001356Homeobox domain
CDDcd000861.74E-1754113No hitNo description
PfamPF000466.9E-1755110IPR001356Homeobox domain
PROSITE profilePS5084845.235231452IPR002913START domain
SuperFamilySSF559612.66E-35231451No hitNo description
CDDcd088758.34E-121235448No hitNo description
SMARTSM002344.9E-64240449IPR002913START domain
PfamPF018521.5E-54241449IPR002913START domain
Gene3DG3DSA:3.30.530.206.5E-5347449IPR023393START-like domain
SuperFamilySSF559611.39E-26467699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MFESHQLVDM SHKTAENDME RMMRGEDEFE SKSGTDIMEA PSGDDDPDPT QRAKRKRYHR  60
HTQHQIQEME SFFKECPHPD DKQRKELGRR LDLEPLQVKF WFQNKRTQMK AKHERCENTQ  120
LRNENDKLRA ENIRYKEALS NAICPNCGGP ATIGEMSFDE QHLRIENARL REEIDRISGI  180
AAKYVGKPML TYPNGPARSI DLGDGNFGLQ SGPVGDLYGP GDILRTVSGP TEADKPMIIE  240
LAVAAMEEVI RMAQSGEPLW VSSPGNSTEA LSEEEYFRTF PRGIGPKPLG LKSEASRESA  300
VVIMNHVNLV EILMDVSQWA NVFSGIVSRA VTMEVLSTGM TAEYQVPSPL VPTRENYFVR  360
YCKQHADGTW AVVDVSLDNL RPSSVSRCRR RPSGCLIQEV PNGYSKVTWV EHVEVDDRAV  420
HSLYRPLVNS GLAFGAKRWV ATLDRQCERL ASAMANSIPA DVGVITTSEG RKSMLKLAER  480
MVMSFCTGVG ASTAHAWTTL SGSGADDVRV MTRKSIDDPG RPPGIVLSAA TSFWLPVPPK  540
RVFDFLRDEN SRSEWDILSN GGLVQEMAHI ANGRDPGNSV SLLRVNSANS SQSNMLILQE  600
SCTDSTGSYV IYAPVDIVAM NVVLSGGDPD YVALLPSGFA ILPDGPTQHG AVIPEVGSGG  660
SLLTVAFQIL VDSVPTAKLS LGSVATVNSL IKCTVERIKS AVGGENV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124330.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028124331.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028124332.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028124333.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028124334.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028124335.10.0homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A2R6Q9Y70.0A0A2R6Q9Y7_ACTCH; Homeobox-leucine zipper protein PROTODERMAL FACTOR like
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]