PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn327221

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MIKC_MADS

Protein Properties

Length: 655aa MW: 73671.4 Da PI: 7.7806

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn327221	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.7	1.5e-28	490	539	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCda+va+i+fs++gkly ++s Achn327221 490 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVALIVFSPRGKLYKFAS 539 8***********************************************86 PP
2	K-box	62.7	1.4e-21	539	600	34	95
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 + R+llGedL+s++ +eLqq++qqLe+slk+iR++K ++++eqi++l++kek l +en +L Achn327221 539 SSRKLLGEDLGSCTCEELQQIQQQLEQSLKRIRERKIQVFKEQIDQLKEKEKTLADENAMLC 600 56********************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF69593	3.27E-7	145	306	No hit	No description
CDD	cd07991	5.95E-50	157	319	No hit	No description
SMART	SM00563	0.0027	182	256	IPR002123	Phospholipid/glycerol acyltransferase
SuperFamily	SSF47473	3.65E-5	331	416	IPR011992	EF-hand domain pair
Gene3D	G3DSA:1.10.238.10	3.4E-4	340	417	IPR011992	EF-hand domain pair
SMART	SM00432	2.7E-40	481	540	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.006	481	541	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.50E-35	483	540	No hit	No description
SuperFamily	SSF55455	4.06E-27	483	541	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-28	483	503	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	483	537	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.4E-26	490	537	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-28	503	518	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	11.622	513	612	IPR002487	Transcription factor, K-box
PRINTS	PR00404	1.3E-28	518	539	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	3.2E-21	539	601	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006644	Biological Process	phospholipid metabolic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity
GO:0050200	Molecular Function	plasmalogen synthase activity

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
MAEPDLISPL LPKAGLSQPS DEPQFIVTVD DDRGSESLPQ STHQQAPNRT HNPNHRASNT 60 HLGMESPFGF LGVGGFDVPA TATIDPFRNQ TAMIEGVYEC VKILICVPIA IARLLLFGLS 120 LSVGYVATKI ALQGWKDKEN PMPKWRCRFM WVTRLCARCI LFAFGYHWIK RRGRPAPRET 180 APIVVSNHVS YIEPIFFFYE LFPTIVAAES HDSIPFVGTI IRAMQGTTTN GRLLISFQLG 240 AFIPGYPIQP VVVRYPHVHF DQSCETVVWS QIVQVEYLPV ISPLENQKEN AVHFAERTGR 300 IIATALNVVQ TSHSYGDFML LAKASESKQT FHLSSLEAVD FLDTFLSMNP DSSGHVKVHD 360 FCRVLRLKAC RLSEKFLYGS AHVLKQPLFR QACEFAFAEC HTSGNHYISE QEFGHSALQA 420 IPNLKQFERC PINNANPPVY SCGSNLANQV QPKCQNKPSE HNNSGWGLYS FGLGVSDLEI 480 MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AQVALIVFSP RGKLYKFASS 540 RKLLGEDLGS CTCEELQQIQ QQLEQSLKRI RERKIQVFKE QIDQLKEKEK TLADENAMLC 600 EIREKIGQQA RQESNEDREM VALTESSENS DVETELFIGP PEGRIKRTLT SLYI*

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

MAEPDLISPL LPKAGLSQPS DEPQFIVTVD DDRGSESLPQ STHQQAPNRT HNPNHRASNT  60
HLGMESPFGF LGVGGFDVPA TATIDPFRNQ TAMIEGVYEC VKILICVPIA IARLLLFGLS  120
LSVGYVATKI ALQGWKDKEN PMPKWRCRFM WVTRLCARCI LFAFGYHWIK RRGRPAPRET  180
APIVVSNHVS YIEPIFFFYE LFPTIVAAES HDSIPFVGTI IRAMQGTTTN GRLLISFQLG  240
AFIPGYPIQP VVVRYPHVHF DQSCETVVWS QIVQVEYLPV ISPLENQKEN AVHFAERTGR  300
IIATALNVVQ TSHSYGDFML LAKASESKQT FHLSSLEAVD FLDTFLSMNP DSSGHVKVHD  360
FCRVLRLKAC RLSEKFLYGS AHVLKQPLFR QACEFAFAEC HTSGNHYISE QEFGHSALQA  420
IPNLKQFERC PINNANPPVY SCGSNLANQV QPKCQNKPSE HNNSGWGLYS FGLGVSDLEI  480
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AQVALIVFSP RGKLYKFASS  540
RKLLGEDLGS CTCEELQQIQ QQLEQSLKRI RERKIQVFKE QIDQLKEKEK TLADENAMLC  600
EIREKIGQQA RQESNEDREM VALTESSENS DVETELFIGP PEGRIKRTLT SLYI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	2e-15	483	540	2	59	Myocyte-specific enhancer factor 2A
3mu6_B	2e-15	483	540	2	59	Myocyte-specific enhancer factor 2A
3mu6_C	2e-15	483	540	2	59	Myocyte-specific enhancer factor 2A
3mu6_D	2e-15	483	540	2	59	Myocyte-specific enhancer factor 2A
5f28_A	3e-15	481	540	1	60	MEF2C
5f28_B	3e-15	481	540	1	60	MEF2C
5f28_C	3e-15	481	540	1	60	MEF2C
5f28_D	3e-15	481	540	1	60	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Displays acyl-CoA-dependent lysophospholipid acyltransferase activity with a subset of lysophospholipids as substrates. Exhibits strong acylation activity of lysophosphatidylethanolamine (LPE) and lower activity on lysophosphatidate (LPA). Has a preference for 18:1-LPE over 16:0-LPE as acceptor and palmitoyl-CoA (16:0-CoA) as acyl donor. Activity is calcium-independent. {ECO:0000269\|PubMed:19445718}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP407153	0.0	KP407153.1 Actinidia chinensis SOC1g (SOC1g) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028068627.1	0.0	lysophospholipid acyltransferase LPEAT2-like isoform X1
Swissprot	Q8S8S2	1e-167	LPCT2_ARATH; Lysophospholipid acyltransferase LPEAT2
TrEMBL	A0A2R6QPA8	0.0	A0A2R6QPA8_ACTCH; Lysophospholipid acyltransferase
STRING	VIT_15s0048g01230.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	9e-43	AGAMOUS-like 20

Publications ? help Back to Top
Hori K,Watanabe Y UPF3 suppresses aberrant spliced mRNA in Arabidopsis. Plant J., 2005. 43(4): p. 530-40 [PMID:16098107] Riehs N, et al. Arabidopsis SMG7 protein is required for exit from meiosis. J. Cell. Sci., 2008. 121(Pt 13): p. 2208-16 [PMID:18544632] Stålberg K,Ståhl U,Stymne S,Ohlrogge J Characterization of two Arabidopsis thaliana acyltransferases with preference for lysophosphatidylethanolamine. BMC Plant Biol., 2009. 9: p. 60 [PMID:19445718] Jasieniecka-Gazarkiewicz K, et al. Acyl-CoA:Lysophosphatidylethanolamine Acyltransferase Activity Regulates Growth of Arabidopsis. Plant Physiol., 2017. 174(2): p. 986-998 [PMID:28408542]