PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn327871

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 204aa MW: 22993 Da PI: 9.6674

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn327871	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.7	9.1e-19	42	126	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vG +r+ +s++s+r+g+i++r + C ++++++ + ++r r gC+a++ vkke ++ w v k++ +HnH+l+ Achn327871 42 FYDEYATRVGLVTRVLSSRRSERDGSIISRGLGCRDGPYSKQSEGV---ALQKRDRRRDGCTAMILVKKE-KSGWAVRKFVRDHNHPLV 126 9*******************************887777766555...88999999*********.899***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.1E-17	42	126	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MEDGAGIIVA SVGGELSSGE FEGNQEPVEG MLFDTEEAAR AFYDEYATRV GLVTRVLSSR 60 RSERDGSIIS RGLGCRDGPY SKQSEGVALQ KRDRRRDGCT AMILVKKEKS GWAVRKFVRD 120 HNHPLVVSLP NRRTNLDEKD RKIQELTAEL RVKKRLSTAY RDQLLSLMKD VEEHNENLST 180 KAQVVLNKLK ELDAKRKDLS HHR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028122841.1	1e-110	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
TrEMBL	A0A2R6S0S0	1e-146	A0A2R6S0S0_ACTCH; Protein FAR1-RELATED SEQUENCE like (Fragment)
STRING	XP_009764129.1	5e-92	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13099	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	3e-54	FAR1 family protein