PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn327891

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 248aa MW: 28705.1 Da PI: 6.1851

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn327891	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.9	1.2e-26	74	165	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y++++GF++r++++++s ++ i+ r+fvCskeg+r+++ + +++ ++r+ tr gC+a+l++ ++ gkw+++ +++eHnHel+p Achn327891 74 EFYEMYGRRLGFTIRNNRTRRSLKDSAIIGREFVCSKEGFRADKCANrESRILQSRPATREGCNAMLRIAAKDGGKWVIYCFVKEHNHELNP 165 6***************************************9988834555689********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-23	74	165	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MASTSGQGFN SNGIYRRWLA ETFDGHETAD DNLSDNPNRS NDIIKQSIEN VHLSLEALEP 60 LVGMEFESAE DAREFYEMYG RRLGFTIRNN RTRRSLKDSA IIGREFVCSK EGFRADKCAN 120 RESRILQSRP ATREGCNAML RIAAKDGGKW VIYCFVKEHN HELNPSKVPP RRSHRIAFCE 180 DEKDLKIREL SSELHRERKR SAAYQEQLQM VLKYVEEHTQ RLSLNVQIVF DKVKELESEE 240 QDDLDFD*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028122838.1	1e-151	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2R6S0N5	0.0	A0A2R6S0N5_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	VIT_05s0102g00400.t01	1e-142	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21641	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	9e-50	FAR1 family protein