PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn327901

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 255aa MW: 29293.6 Da PI: 5.4249

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn327901	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.7	5.4e-25	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr...traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++ +k r + ++tr gC+a++++ ++ g+w vtk+++eH+H+l+ Achn327901 78 EFYVAYGRHIGFTVRIHHNRRSRVNHQVIGQDFVCSKEGFRAKKYVY-RKD-RllpPPPTTREGCQAMIRLAVRDGGRWAVTKFVKEHSHTLM 168 6****************************************9988.222.2345899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-22	78	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MENAISNGFD SDESDLDVQA ESDGEHEHIE NEHPDDSEFY VGENDKMIEQ SVGELSSTVE 60 ALEPYVGMEF NSRDEAREFY VAYGRHIGFT VRIHHNRRSR VNHQVIGQDF VCSKEGFRAK 120 KYVYRKDRLL PPPPTTREGC QAMIRLAVRD GGRWAVTKFV KEHSHTLMSP GKVPWRGSAK 180 HLLSEDEKDK RIRELSIELC NERQKCKRRC AVYEEQLNMI LQDLEKHTEH ISCKVSDIVQ 240 SLKAIEEQSD ESDG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028122837.1	1e-152	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2R6S0R5	0.0	A0A2R6S0R5_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	evm.model.supercontig_9.294	1e-135	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-41	FAR1 family protein