PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn329831
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 486aa    MW: 54925.3 Da    PI: 5.4232
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn329831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11224286655
                 HHHHHHHHHHHHHHHHHHHCTSCC.C..............TTS-.STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPk.as...........kapskK.lsKaeiLekAveYIksLq 55 
                  e+ErrRR+++N+++ +Lr+l+Pk +             a++   l+ a+iL  A+e++k+Lq
  Achn329831 224 LEAERRRRKKLNDRLYTLRSLVPKiSKinagdtkstdvVADDFIlLDRASILGDAIEFVKELQ 286
                 589*********************666***********9999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-13212298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.859218285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-10220290No hitNo description
PfamPF000102.5E-9223286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-11224291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-13225299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MSNQATWLNF SNNSDSNALE ETVGTRVLIP VAIGLVELFV AKQVPEDQQI VDYVTSQTSI  60
LLEQPPMIHS SNMDPSFSMN NGIHEIQSKP FLGDESHQKD LNNPFQAPEN PNLPYDISVD  120
RIRLCNNSPM NFLPPFNNYP PSETRTRNDS FFDGAIDPFK SLAENGFQEM ESLGNKEQQG  180
TDKDSVKQET GRSESISDCS DINDDEDDAK YRRRTGKGPQ SKNLEAERRR RKKLNDRLYT  240
LRSLVPKISK INAGDTKSTD VVADDFILLD RASILGDAIE FVKELQKQVK DLQLELEEQS  300
DDEATNNHNN GRSESLNQSG THVGSKPDHE KSPNGFHNND SETNYDKPRQ MEPQVEVAQL  360
DGNEFFLKIF CEHKRGGFVR LMEALNSLGL EVTNVNVTSY RCLVSYVFKV EKRDSEMVQA  420
EDVRDSLLEI TRNPSGSGWS EMAKVSENGN SKDYHHNHSY HPNGNHSHLH GHHISSHHHH  480
HHLHN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211232RRRTGKGPQSKNLEAERRRRKK
2226233ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028053722.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_028053723.10.0transcription factor ABORTED MICROSPORES-like
TrEMBLA0A2R6QQB10.0A0A2R6QQB1_ACTCH; Transcription factor ABORTED MICROSPORES like
STRINGcassava4.1_029776m1e-167(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-88bHLH family protein