PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn330511
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 441aa    MW: 51040.6 Da    PI: 7.8375
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn330511genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.7e-08408430225
                 -S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                  + lCrf+a+ G C yGd+Ck+ H
  Achn330511 408 QRQLCRFYAQ-GRCYYGDQCKYLH 430
                 578*******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.577406433IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4407432IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7407431IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5408430IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-6408433IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEVTEQNQVA GQYHYMEEDE SDAQDSDSDD SEEDPTFDVV EETRSSFSTL SIKKKSKSPI  60
IRETEESDEE VSDVVELVVP ELNEEDQKSF EFVQTIIEGD ACTGDVVMFE QNVYEMYNIA  120
SRSASGPPCG TRIVAGRIVK ESYGAAKQQH TFTGRNLYRL KTMRQRWKDE GERQKILSEK  180
HARGSLARSS RETRIQLKEM RKTLKGNRTL RVEDQNIKKN KTEGQSFQSL CIGSQKLGSQ  240
PQQQQKNMQG HQEQKMQQKE GLHYKTCKEN TTVLLETLPR QPGYFPNVNL PLEKIHHQMQ  300
HSTNMPSRSS FQRQNHDQRI QSIPSQSSLR RPLASLNYST QPEYYAPHPY QSCYSSMSPL  360
QSHNHEQGIK IPWRNPFQRQ GLEQKHTHQE NTNFSPTKGQ FQRHGPQQRQ LCRFYAQGRC  420
YYGDQCKYLH EYQNYGPPKG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028106757.11e-100zinc finger CCCH domain-containing protein 62-like
TrEMBLA0A2R6QFG80.0A0A2R6QFG8_ACTCH; Zinc finger CCCH domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA330388