PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn330611

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NF-YA

Protein Properties

Length: 1014aa MW: 110376 Da PI: 6.8114

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn330611	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.6	7.6e-32	851	907	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++Il+RRq Rakle++++l +ksrkpylh+SRh+hAl+R+RgsgGrF Achn330611 851 DEPIYVNAKQYHAILRRRQYRAKLEAQNRL-SKSRKPYLHDSRHQHALKRARGSGGRF 907 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14438	4.1E-14	95	163	IPR025852	Ataxin 2, SM domain
SMART	SM01272	1.1E-34	239	310	IPR009604	LsmAD domain
Pfam	PF06741	1.3E-24	239	309	IPR009604	LsmAD domain
SMART	SM00521	6.4E-37	849	910	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.475	850	910	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.3E-27	852	907	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.3E-23	853	875	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	855	875	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.3E-23	884	907	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1014 aa Download sequence Send to blast
MGIDTGTIRA RCCRRLAKLI HVYVIRLELC FGMNLQQVAN PPRSASNGYG RRRVERENFS 60 KQELKPVSGK TKPSRLTNAG ALAGGKTGGD GSPSRERLVY LTTCLIGHHV EVQAADGSLF 120 SGIFHATNAE EDFGQMSITD NISKGPSKTL IIPAKELVQI TAKGVSVTRD GFTNDLQHVK 180 QQDIMLDASI SQSRHVEAER QLERWVPDED NPQCPELENI FDGHWNRGWD QFEANEALFG 240 VKSTFDEELY TTKLERGPQT RELERKAIRI AKEIEGEETQ DLHLAEERGV DLDENFDIDE 300 ETRFSSVFRG VDGSGYYEDD EVVLDSHNTE TFGGASTSAI SRSCANLTSG KSDDADQMSS 360 CSSLKDDVQG SVSSTMRDLN KSDSSDRSRQ PLSEFISKNA ASDGDSRIQE NQFSEQLGIN 420 YLTEFVEKKT LAEEAQKMKS EDLQSSLSTM KDGADIGGHS INATLYASTS LGSSKGQNKM 480 SSPGELKDDV APAKPQGATQ SARSRGRPGS ASSTSECGGA ATTSSGPGLS PSSSVGSLSS 540 EKSTLNPHAK EFKLNPNAKS FTPSQAPLRP ASPVSDGSFY FPTNVAAVPH MHGVPVGLGV 600 GPSFAHQPVV YNPQMAPMQS PQAYFHPNGP QYGQQMILGH PRQVLYMPNY PPWRSPSCTR 660 SFSGRMQDFC KKDSDLSSAH SMVPRVAVGA PWLTSTASQI QPSALSKSLS LKMVTPNQHG 720 HNAKQIGFQF QEQDSSSTQS TGQSYHEAAS VGESNGCGQS IISMQSGYNG IHGKPEVDQI 780 KSALSMGTQD SVLQPAQIDY WQSFACIPFS YTDPYYSGLL AASGPNAMIH HPQMLEMATA 840 RVPLPLDLPQ DEPIYVNAKQ YHAILRRRQY RAKLEAQNRL SKSRKPYLHD SRHQHALKRA 900 RGSGGRFLNT KELQECKTNA TTNGQDKSGS THFHLSTTTT SESEGHLPEN YKDGASTTSC 960 SDITSASNND SIFKHQEFRF SLYPTTCVGR ARHSGGGGVD IHGANQSFLS VHR*

Sequence ? help Back to Top

Protein Sequence Length: 1014 aa Download sequence Send to blast

MGIDTGTIRA RCCRRLAKLI HVYVIRLELC FGMNLQQVAN PPRSASNGYG RRRVERENFS  60
KQELKPVSGK TKPSRLTNAG ALAGGKTGGD GSPSRERLVY LTTCLIGHHV EVQAADGSLF  120
SGIFHATNAE EDFGQMSITD NISKGPSKTL IIPAKELVQI TAKGVSVTRD GFTNDLQHVK  180
QQDIMLDASI SQSRHVEAER QLERWVPDED NPQCPELENI FDGHWNRGWD QFEANEALFG  240
VKSTFDEELY TTKLERGPQT RELERKAIRI AKEIEGEETQ DLHLAEERGV DLDENFDIDE  300
ETRFSSVFRG VDGSGYYEDD EVVLDSHNTE TFGGASTSAI SRSCANLTSG KSDDADQMSS  360
CSSLKDDVQG SVSSTMRDLN KSDSSDRSRQ PLSEFISKNA ASDGDSRIQE NQFSEQLGIN  420
YLTEFVEKKT LAEEAQKMKS EDLQSSLSTM KDGADIGGHS INATLYASTS LGSSKGQNKM  480
SSPGELKDDV APAKPQGATQ SARSRGRPGS ASSTSECGGA ATTSSGPGLS PSSSVGSLSS  540
EKSTLNPHAK EFKLNPNAKS FTPSQAPLRP ASPVSDGSFY FPTNVAAVPH MHGVPVGLGV  600
GPSFAHQPVV YNPQMAPMQS PQAYFHPNGP QYGQQMILGH PRQVLYMPNY PPWRSPSCTR  660
SFSGRMQDFC KKDSDLSSAH SMVPRVAVGA PWLTSTASQI QPSALSKSLS LKMVTPNQHG  720
HNAKQIGFQF QEQDSSSTQS TGQSYHEAAS VGESNGCGQS IISMQSGYNG IHGKPEVDQI  780
KSALSMGTQD SVLQPAQIDY WQSFACIPFS YTDPYYSGLL AASGPNAMIH HPQMLEMATA  840
RVPLPLDLPQ DEPIYVNAKQ YHAILRRRQY RAKLEAQNRL SKSRKPYLHD SRHQHALKRA  900
RGSGGRFLNT KELQECKTNA TTNGQDKSGS THFHLSTTTT SESEGHLPEN YKDGASTTSC  960
SDITSASNND SIFKHQEFRF SLYPTTCVGR ARHSGGGGVD IHGANQSFLS VHR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-20	851	912	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028096707.1	0.0	polyadenylate-binding protein-interacting protein 4 isoform X1
Refseq	XP_028096708.1	0.0	polyadenylate-binding protein-interacting protein 4 isoform X1
TrEMBL	A0A2R6QFG4	0.0	A0A2R6QFG4_ACTCH; Polyadenylate-binding protein
STRING	VIT_09s0002g01560.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3166	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	8e-61	nuclear factor Y, subunit A3