PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn330741
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 372aa    MW: 40805 Da    PI: 9.3505
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn330741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.8e-067193123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  Achn330741 71 FVCEICNKGFQRDQNLQLHRRGH 93
                89*******************88 PP
2zf-C2H213.30.00026147169123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k++  +s+ k H +t+
  Achn330741 147 WKCDKCSKRYAVQSDWKAHSKTC 169
                 58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-57093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.88E-77093No hitNo description
PfamPF121715.5E-57193IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0177193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9497193IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355210112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.88E-7142167No hitNo description
SMARTSM00355140147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MSNLTSASGE ASISSTNKAE TIFPHQQQYF APTTQTQPVV VKKKRNLPGN PDPEAEVIAL  60
SPKTLLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTSKEVRKK VYVCPEPSCV  120
HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TREYKCDCGT  180
LFSSHSILPF HDQNQPISPN PNPSLGPTIH FYQPIASPHL SATALLQKAA QMGATMSRNK  240
TEAEPAMVRA HQGHVPADSA SFSLNLSSCE EMGSGFLSVF GNKAVDVPTG TTSLAPPSSL  300
LQEMISLSSF GDGSSFHDSL SRRSDHEGCM TRDFLGLRPL SHSDILSITG LSSHASTNQA  360
NQNQTQKSWQ G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-21143191351Zinc finger protein JACKDAW
5b3h_F1e-21143191351Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197109KLKQRTSKEVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4651831e-126AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573141.11e-126protein indeterminate-domain 7-like
TrEMBLA0A2R6QFE91e-131A0A2R6QFE9_ACTCH; Protein indeterminate-domain like
STRINGXP_007135542.11e-124(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-102indeterminate(ID)-domain 11