PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn332351
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 203aa    MW: 22220.7 Da    PI: 9.384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn332351genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.8e-111291691055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Achn332351 129 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 169
                 9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.55E-15119184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-13124178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.97E-11128173No hitNo description
PfamPF000101.7E-8129169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGEDKNTLRS PVEAYSNNSV EGDREMSSGS IEESKASGED KITNLPPNSK KRSRGSGDVQ  60
RKRNVRPKKS KNVVSAEENN ARLNSSSSCS EDDSNGPLEQ NGGVTCSSTS SKGRASRGSA  120
TDPQSLYARK RRERINERLK ILQNLVPNGT KVDISTMLEE AVQYVKFLQL QIKLLSSDDL  180
WMYSPIAYNG MDIGLMNITT PN*
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028125878.13e-73transcription factor bHLH84-like
SwissprotQ84WK01e-55BH085_ARATH; Transcription factor bHLH85
TrEMBLA0A2R6RGX51e-141A0A2R6RGX5_ACTCH; Transcription factor bHLH85 like
STRINGcassava4.1_025829m3e-72(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Rymen B, et al.
    ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator.
    Plant Physiol., 2017. 173(3): p. 1750-1762
    [PMID:28167701]
  3. Han H, et al.
    Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution.
    Planta, 2017. 246(5): p. 1019-1028
    [PMID:28770336]