PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn334061
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 194aa    MW: 21673.2 Da    PI: 8.4664
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn334061genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.51.5e-271059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n++ rqvtfskRr g+lKKA+ELS+LCdaev v++fsstgkly+++s
  Achn334061 10 RIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVMVFSSTGKLYDFAS 59
                8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.478161IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-41160IPR002100Transcription factor, MADS-box
CDDcd002656.75E-47277No hitNo description
SuperFamilySSF554555.1E-33291IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-293859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGRGKIEIRR IDNSTSRQVT FSKRRSGLLK KAKELSILCD AEVGVMVFSS TGKLYDFAST  60
STKSIVERYN KLKEEHRRLP NPTSEVQVWD RAEEMFSGIG NLRRTYDLHQ AFFSLSPDDM  120
LLEVFYGKFY NICEEIALTA SMGPYRPLGV GLAAAAIVIV ILHAVAVLMD MVVVVKGVVH  180
DSVLMENHIV DRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-21181181MEF2C
5f28_B5e-21181181MEF2C
5f28_C5e-21181181MEF2C
5f28_D5e-21181181MEF2C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003639.16e-50PREDICTED: MADS-box transcription factor 23-like isoform X2
TrEMBLA0A2R6Q6819e-57A0A2R6Q681_ACTCH; MADS-box transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.12e-45AGAMOUS-like 44