PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn334541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 222aa    MW: 24404.2 Da    PI: 4.5887
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn334541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.8e-0836602348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                      W++Ia++++ gRt++++k+ w+++l
       Achn334541 36 KWSAIAARLP-GRTDNEIKNVWHTHL 60
                     4*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.3882660IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.9E-133077IPR009057Homeodomain-like
SuperFamilySSF466893.51E-83469IPR009057Homeodomain-like
CDDcd001674.08E-53660No hitNo description
PfamPF002494.3E-63660IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTLCSRQLQF ESLSGLRELN VKDSPIAIIK STSLTKWSAI AARLPGRTDN EIKNVWHTHL  60
KKRLKSYQIT KGQSLTLLKE HDSHDASESK SMDLSFPIQT PVSPQDSSSE HSSVINLTAF  120
PTNMVPKDEQ MDVFETFSQI DESLLFDELS TENSNSDSNV GSDFLGITGK LGFQLPSSQA  180
IATTTCSMEH ANESNLNIDD GVDFWYNLFI GAGSLPGLPE F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15965LKKRLKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077700.12e-59transcription factor MYB15-like
TrEMBLA0A2R6RUQ31e-132A0A2R6RUQ3_ACTCH; Myb-related protein like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.21e-19myb domain protein 15