PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn334631
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 147aa    MW: 16793.7 Da    PI: 5.1602
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn334631genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.13.3e-212273256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                +y+GVr+++ +g+++AeIrdps +g  +r +lg+f+tae+Aa+a+++a+ +++g+
  Achn334631 22 RYRGVRRRP-WGKYAAEIRDPSRQG--ARLWLGTFDTAEDAARAYDQAAFNMRGH 73
                6********.**********96543..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.54E-292281No hitNo description
SuperFamilySSF541718.5E-242281IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-322282IPR001471AP2/ERF domain
PfamPF008471.8E-152273IPR001471AP2/ERF domain
SMARTSM003802.4E-382286IPR001471AP2/ERF domain
PROSITE profilePS5103224.7242280IPR001471AP2/ERF domain
PRINTSPR003671.4E-112334IPR001471AP2/ERF domain
PRINTSPR003671.4E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEDPSKGKGK QEKEEKGREE VRYRGVRRRP WGKYAAEIRD PSRQGARLWL GTFDTAEDAA  60
RAYDQAAFNM RGHLAILNFP NEYYSQLTSS PYPTMAYPPN PSEGFEKGVS SSRGQERQVL  120
ELECLDDKVL EELLESEEEK KKRMGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-32171299114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364607.18e-63ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC55e-49ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2R6RUT41e-102A0A2R6RUT4_ACTCH; Ethylene-responsive transcription factor
STRINGGLYMA20G34560.17e-58(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-20ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]