PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn335401
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 534aa    MW: 59485.1 Da    PI: 9.2631
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn335401genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00097373395123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k+F++   L  H  +H
  Achn335401 373 FECTTCNKTFRSYQALGGHRASH 395
                 89**********99999998887 PP
2zf-C2H2120.00066447469123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C k+F++   L  H r+H
  Achn335401 447 HECPICFKVFPSGQALGGHKRSH 469
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.117294IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9727299IPR007087Zinc finger, C2H2
PfamPF139123.8E-77496IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
PfamPF139123.1E-12373397IPR007087Zinc finger, C2H2
SMARTSM003550.034373395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.325373400IPR007087Zinc finger, C2H2
SuperFamilySSF576671.83E-7373395No hitNo description
PROSITE patternPS000280375395IPR007087Zinc finger, C2H2
SuperFamilySSF576671.83E-7442469No hitNo description
PfamPF139121.3E-11447469IPR007087Zinc finger, C2H2
SMARTSM003550.074447469IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974447469IPR007087Zinc finger, C2H2
PROSITE patternPS000280449469IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MRSHVMNSSH DEINSKLTKK KLSSIKHASI KAKPDVTGYE VGTNAAYSLR ENPKKTPKFA  60
GSNNDYALLH DKLCKECGKG FQSWKALFGH MKCHSEKFSN SLEVEDSWSQ SDNETAAPNR  120
KKRSRRVRRY LATTSSSLSM ANNNRNNNNN NASSSVSEND QQEQEEVATC LMMLSRDVGS  180
HKFSVDESSD NNFELLEGGS SIRSNQVAKS EKFKKLRNGK LESAVLETNS QFDYSKQSEY  240
KLKMYKVGNG GRFAESEVEL GKNNWPHVGE NVKFKKLKNG KLESATLDSN SQFASGFSRN  300
GSRPNKSDLH GDGFFGDDKT DKSRVEYESI FEASEIELGK TLVKENVLDQ AEFSSKSKKL  360
SCNNLESETR SKFECTTCNK TFRSYQALGG HRASHKKTQG CFATKTNSNE NSIGTETKPP  420
QNESRPIDQE KSKKTVCNSK KPNKNSHECP ICFKVFPSGQ ALGGHKRSHL VAGSEAKSNQ  480
SVVVIQKPIP ETRDFLDLNL PAPTEEESNE FKPWWVGIGT NLEQEPVFGL ISN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028112256.11e-144zinc finger protein ZAT1-like
TrEMBLA0A2R6QH740.0A0A2R6QH74_ACTCH; Zinc finger protein
STRINGEOY220001e-124(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-30C2H2-like zinc finger protein