PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn335591
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 147aa    MW: 16479.8 Da    PI: 7.2598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn335591genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.4e-102977255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                rr + + +r RR ri ++++ L ellP++     k  sKa+ L   +++Ik Lq
  Achn335591 29 RRRATATDRLRRVRIAERLDALNELLPSP-----KEGSKASLLDDIIDHIKFLQ 77
                667899***********************.....679****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.0332776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-102884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-72977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-112987IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-72981No hitNo description
SMARTSM003531.4E-63382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MRQESNESHS QVAGAALGFS SKTHNRISRR RATATDRLRR VRIAERLDAL NELLPSPKEG  60
SKASLLDDII DHIKFLQLQV KGYGHYLLHE QMNDPLEEMM GRLLEVNPSA ATQLLESRGL  120
LIMPTDLAEG LHQVDHPPEN KLKGIW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028086748.16e-62transcription factor bHLH66-like isoform X3
TrEMBLA0A2R6PP267e-93A0A2R6PP26_ACTCH; Transcription factor bHLH7 like
STRINGEOX948198e-43(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96461617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-13LJRHL1-like 2