PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn336591

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

WOX

Protein Properties

Length: 216aa MW: 24545.7 Da PI: 8.9119

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn336591	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65	1.1e-20	81	140	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l+++ r+p+a+++e+++ +l +++ ++V++WFqN++a++++ Achn336591 81 TRWNPTQEQIGILEMLYRSgMRTPNAQQIEHITVQLgkygKIEGKNVFYWFQNHKARDRQ 140 7***************99***********************************996 PP
2	Wus_type_Homeobox	117.4	6.3e-38	81	142	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+sG+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaR+rqkq Achn336591 81 TRWNPTQEQIGILEMLYRSGMRTPNAQQIEHITVQLGKYGKIEGKNVFYWFQNHKARDRQKQ 142 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.042	76	141	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.41E-12	77	147	IPR009057	Homeodomain-like
SMART	SM00389	2.5E-7	78	145	IPR001356	Homeobox domain
CDD	cd00086	1.16E-5	81	142	No hit	No description
Pfam	PF00046	2.4E-18	81	140	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.5E-8	82	140	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MGSSSMKVHH QLSRGLFDHE PFLTLGCKSL RPLAPKLPHP HSGGAAFDLH TFIRPEYGPI 60 KLASPDNHLE TTQVETQPGG TRWNPTQEQI GILEMLYRSG MRTPNAQQIE HITVQLGKYG 120 KIEGKNVFYW FQNHKARDRQ KQKRNSLGLN HSPRSPTATI TTVTLDTRGQ VEREDSPYKR 180 KCRTWTFESL EEDEGFCCKE GDKTLELFPL HPEGR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021689235.1	1e-109	WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	9e-65	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A2R6QY44	1e-158	A0A2R6QY44_ACTCH; WUSCHEL-related homeobox like
STRING	VIT_18s0001g10160.t01	1e-107	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6186	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	4e-67	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]