PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn336751

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 992aa MW: 108882 Da PI: 4.8983

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn336751	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5e-29	589	640	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Achn336751 589 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 640 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.779	579	660	IPR003035	RWP-RK domain
Pfam	PF02042	4.1E-26	593	640	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.8E-23	880	975	No hit	No description
PROSITE profile	PS51745	22.136	891	973	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.9E-25	891	972	No hit	No description
SMART	SM00666	2.7E-25	891	973	IPR000270	PB1 domain
Pfam	PF00564	9.7E-20	892	972	IPR000270	PB1 domain
CDD	cd06407	8.49E-33	892	972	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence Send to blast
MEYPFSSKER GGYWASPRGQ MEGGISSEDP FNNVVEHMNF DTYAGWCSSP QTADPLFSAY 60 AFSPLQSMPS TSYAPFDALN FNEQNIASLP GPDGDVSGSS YSGGDKMVFQ HMNTQFGFPM 120 DSSGWDDPGT RKGSGSFQQN VTGNGLVPRP LAQTLSEKML RALSLFKESS GGGILAQVWV 180 PIKNGDRYIL STCEQPYLLD QMLTGYREVS RAYTFSAEEK PGSFPGLPGR VFISKLPEWT 240 SNVVYYNAAE YLRIQHAVDH EVRGSIALPI FEEDPLEMSC CAVLELVTMK EKPNFDSEME 300 IVCRALQAVS LRSTAPPKLY SQYLSKNQRA ALAEITDVLR AVCHAHRLPL ALTWIPCCYN 360 EGVGNDILRL RVKGGNASLN EKCILCIEDT ACYVNDREMQ EFVYACAEHY LEEGQGIAGK 420 ALQSNHPFFF PDVKSYDMSD YPLVQHARKF GLTAAVAIRL RSTFTGDDDY ILEFFLPVNM 480 KGSTEQQLLL NNLSGTMQRI CKSLRTVLDA ELVGTKGSNV EFQKGSLPNF PPVAISRRNS 540 QQTLDSSLNS IDQMALDASD PRTVRSEPDG PLEQMSESRR LTEKKRSTAE KHVSLSVLQQ 600 YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQTV LDSVQGVEGG 660 LKFDPTTGGL VSAGSIIQEF DTGGSILFPN KNPSHKKPES VSQDAPSVCP PSCTDTENST 720 VKLEEENYMD GNQAGLPRSL FTLNTYEGEN DSKISQTDCC DDSKSAALDA GDLEQVSLDT 780 GAWTCSEDAS LRSFFGKQGC KSLNTSGLKF ENSDSHFFSR DSDEMDTGMD GDMGMRADDG 840 VIEHNQPTSS GMTDSSNGSG SAMRDSSSSS PSFGGRRHSN THMSSGDSGS KITVKATYKE 900 DTVRFKFEPS LGCNQLYEEV AKRFKLQPGT FQLKYLDDEQ EWVMLVSDAD LQECLEVLDF 960 VGTRSVKFLV RDVPCAMGSS GSSNCFLAAS T*

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence Send to blast

MEYPFSSKER GGYWASPRGQ MEGGISSEDP FNNVVEHMNF DTYAGWCSSP QTADPLFSAY  60
AFSPLQSMPS TSYAPFDALN FNEQNIASLP GPDGDVSGSS YSGGDKMVFQ HMNTQFGFPM  120
DSSGWDDPGT RKGSGSFQQN VTGNGLVPRP LAQTLSEKML RALSLFKESS GGGILAQVWV  180
PIKNGDRYIL STCEQPYLLD QMLTGYREVS RAYTFSAEEK PGSFPGLPGR VFISKLPEWT  240
SNVVYYNAAE YLRIQHAVDH EVRGSIALPI FEEDPLEMSC CAVLELVTMK EKPNFDSEME  300
IVCRALQAVS LRSTAPPKLY SQYLSKNQRA ALAEITDVLR AVCHAHRLPL ALTWIPCCYN  360
EGVGNDILRL RVKGGNASLN EKCILCIEDT ACYVNDREMQ EFVYACAEHY LEEGQGIAGK  420
ALQSNHPFFF PDVKSYDMSD YPLVQHARKF GLTAAVAIRL RSTFTGDDDY ILEFFLPVNM  480
KGSTEQQLLL NNLSGTMQRI CKSLRTVLDA ELVGTKGSNV EFQKGSLPNF PPVAISRRNS  540
QQTLDSSLNS IDQMALDASD PRTVRSEPDG PLEQMSESRR LTEKKRSTAE KHVSLSVLQQ  600
YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQTV LDSVQGVEGG  660
LKFDPTTGGL VSAGSIIQEF DTGGSILFPN KNPSHKKPES VSQDAPSVCP PSCTDTENST  720
VKLEEENYMD GNQAGLPRSL FTLNTYEGEN DSKISQTDCC DDSKSAALDA GDLEQVSLDT  780
GAWTCSEDAS LRSFFGKQGC KSLNTSGLKF ENSDSHFFSR DSDEMDTGMD GDMGMRADDG  840
VIEHNQPTSS GMTDSSNGSG SAMRDSSSSS PSFGGRRHSN THMSSGDSGS KITVKATYKE  900
DTVRFKFEPS LGCNQLYEEV AKRFKLQPGT FQLKYLDDEQ EWVMLVSDAD LQECLEVLDF  960
VGTRSVKFLV RDVPCAMGSS GSSNCFLAAS T*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795771.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795773.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795774.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795775.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795776.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795777.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_009795778.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A2R6RY48	0.0	A0A2R6RY48_ACTCH; Uncharacterized protein
STRING	XP_009795771.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]