PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn336781
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 293aa    MW: 33621.1 Da    PI: 6.5076
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn336781genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000175779123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++   L  H+++H
  Achn336781 57 YSCSFCKREFRSAQALGGHMNVH 79
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.2E-65484No hitNo description
SMARTSM003550.0065779IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.245784IPR007087Zinc finger, C2H2
PfamPF139125.1E-65780IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEQARYCMWP KQKYSLNPHL HQPPTNPYSY GDSWEEQAFA EDASGALGGC VWPPRSYSCS  60
FCKREFRSAQ ALGGHMNVHR RDRARLNQSP ISPHDEDRHH QQHQNHHHHI DVQYPSWIYN  120
PNPNSDHVVL APPSSISRVS SPPLAQENIK EKNFMPLFSS PSLKDFHKKS SIYAPPSWST  180
LVAHNYLHLL DLNDEEKNSK FFGFKEDYVT TDLSVSLNLV VQRTRPTSSG DEEEAISYKR  240
RRTDSAIFKF FAESDSVDHS HNLQSEVLES SSSSEEELDL ELRLGDRPEV KY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-135279229superman protein
2l1o_A3e-135279229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091540.11e-121zinc finger protein 10-like
TrEMBLA0A2R6PA530.0A0A2R6PA53_ACTCH; Transcriptional regulator RABBIT EARS like
STRINGEOY074441e-100(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-27C2H2 family protein