PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn337331
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 282aa    MW: 31712.5 Da    PI: 6.6537
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn337331genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR188.21.2e-27117204291
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 fYn+YA +vGF +r+sk ++s+r+g+++ r +vC++eg+r ++k+   k  r+raetr+gC+a++ v+ke++gkw vtk+++eH+H l+p
  Achn337331 117 FYNAYAMTVGFITRVSKLSRSRRDGSTIGRALVCNREGFRMPDKRG--KIIRQRAETRVGCRAMILVRKESSGKWIVTKFVKEHTHVLTP 204
                 ******************************************9998..99************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-25117204IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGGPKLKPAN PVHPDQPGSY SHNSREHTVD FEVDDDVSGE VVGDSVDVEV RAGEENGIGG  60
CSIEGVFHQS QYDKVSQDIS SREMVQVVEP LSVNGSAVVD EPYIGQEFES EAEAHAFYNA  120
YAMTVGFITR VSKLSRSRRD GSTIGRALVC NREGFRMPDK RGKIIRQRAE TRVGCRAMIL  180
VRKESSGKWI VTKFVKEHTH VLTPGEGRRG LIYDQYPNEH NKIRELSQQL AIEKKRAATY  240
KRHLEMIFEH IEEHDHGLSK KIQGIVDNVR EMESQEQQNP R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028114487.11e-141protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2R6PX190.0A0A2R6PX19_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGVIT_05s0102g00690.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115682325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-101FAR1 family protein