PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn338111
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 246aa    MW: 27798.6 Da    PI: 5.3181
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn338111genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.67.4e-37141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+ +++++sws++g+sf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF++++F +g+++ll++i+
    Achn338111  14 FLTKTYEMVDDPVTNSIVSWSQSGHSFIVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGQRHLLKNIH 101
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    Achn338111 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-40698IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.13E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-6410103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-211437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-215264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-216577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDASNGGSNA PAPFLTKTYE MVDDPVTNSI VSWSQSGHSF IVWNPPEFAR DLLPKYFKHN  60
NFSSFVRQLN TYGFRKIDPD QWEFANEEFI RGQRHLLKNI HRRKPIHSHS AQNSSVPLND  120
SERQEIEEEI DRLKHENSFL QSSSHLESPR ISPIGLSVDV GPKSLGIDVN SKPATTPPAV  180
VTGVNDIFWE QFLTETPGSS HTQEVQSERR DINSIKSEST QSWWNTDNVD NLTEQMGHLT  240
PAENT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-29310319129Heat shock factor protein 1
5d5v_B3e-29310319129Heat shock factor protein 1
5d5v_D3e-29310319129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139802e-56KP013980.1 Populus simonii heat shock transcription factor A4b1 (HsfA4b1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022848644.12e-85heat stress transcription factor A-4b-like isoform X1
RefseqXP_022848645.12e-85heat stress transcription factor A-4b-like isoform X1
RefseqXP_022848646.12e-85heat stress transcription factor A-4b-like isoform X1
SwissprotQ94J161e-62HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A2R6QBW41e-94A0A2R6QBW4_ACTCH; Heat stress transcription factor A-4b like
STRINGXP_006492257.13e-76(Citrus sinensis)
STRINGVIT_12s0028g01410.t011e-76(Vitis vinifera)
STRINGXP_010242159.15e-76(Nelumbo nucifera)
STRINGXP_006448027.13e-76(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.13e-57heat shock transcription factor A1D
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]