PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn338801
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 129aa    MW: 14504.5 Da    PI: 8.8941
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn338801genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH50.14.3e-165175226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                ktelC+ +++tG+C+yGd+C+FaHg
  Achn338801 51 KTELCNKWQQTGQCPYGDNCQFAHG 75
                9***********************8 PP
2zf-CCCH22.32.2e-0788113126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykte Cr  +++  C+yG rC+F H+
  Achn338801  88 YKTEVCRMVLAGDACPYGHRCHFRHS 113
                 9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.8E-194482IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-124681IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.5964977IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-94976IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-135175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-1383116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-983117IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-587114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.18887115IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-488113IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MTQRGGSNSG PSCRIRVKSP SPNGSKRVYV PGGKREEAAL EFEVYNQGML KTELCNKWQQ  60
TGQCPYGDNC QFAHGITELR PVIRHPRYKT EVCRMVLAGD ACPYGHRCHF RHSLTEEERL  120
LGPRLLND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-2151116570Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028071679.13e-78zinc finger CCCH domain-containing protein 14-like
SwissprotA2ZVY55e-51C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A2R6R3V01e-90A0A2R6R3V0_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_009594882.16e-67(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-52C3H family protein