PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn339031
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 190aa    MW: 20808.1 Da    PI: 8.3679
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn339031genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.44.9e-201259249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 i +k  rqvtfskRr g++KKA+EL++L++ e+a+++fs+ gk + +
  Achn339031 12 LIPSKDARQVTFSKRRVGLFKKASELCTLTGCEIAMVVFSPGGKAFSF 59
                5789999************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.282363IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-32362IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-25377IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-17525IPR002100Transcription factor, MADS-box
PfamPF003197.1E-231359IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-172540IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-174061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MTMGRRKIEM KLIPSKDARQ VTFSKRRVGL FKKASELCTL TGCEIAMVVF SPGGKAFSFG  60
HPCVGPIVQR FLYQCPMPAA ADLDPRGSIA STLNQQYNEL CKQLEAEKQH GKELEESGMK  120
CPKPYWFNAP IGELNSDQLV ESKKRMGELR DKVAQRVDEL SVVGSAPTFA TGNFVGAIDL  180
NVPAVPDEI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6PA451e-139A0A2R6PA45_ACTCH; Agamous-like MADS-box protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-36AGAMOUS-like 61