PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn339121
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HB-other
Protein Properties Length: 183aa    MW: 21109.9 Da    PI: 10.163
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn339121genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox375.6e-121041312754
                 HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  27 aeereeLAkklgLterqVkvWFqNrRak 54 
                 ++++++LA+kl+L  rqV vWFqNrRa+
  Achn339121 104 RKQKQDLARKLNLRPRQVEVWFQNRRAR 131
                 789************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.005987139IPR001356Homeobox domain
SuperFamilySSF466891.63E-9102131IPR009057Homeodomain-like
PfamPF000462.0E-9104131IPR001356Homeobox domain
CDDcd000863.51E-8104131No hitNo description
Gene3DG3DSA:1.10.10.602.1E-10104131IPR009057Homeodomain-like
PROSITE profilePS5007111.774104135IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGSDHDDISN TVLVLGLGFS PTSVQNPSKA DNQRPNNKPQ IFEPSLSLGL CGETYNRNTM  60
VAKESDWLVL YREESGASSF SNASVKRERE MGSEEVEIER VWGRKQKQDL ARKLNLRPRQ  120
VEVWFQNRRA RFVFTTSCDY TLGFILRRKA TKGYTCDNSK KRMHVKESIR TLVSYRLTYR  180
IY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109134.11e-40homeobox-leucine zipper protein HAT9-like
TrEMBLA0A2R6PA671e-83A0A2R6PA67_ACTCH; Homeobox-leucine zipper protein
STRINGcassava4.1_013986m2e-28(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-15HD-ZIP family protein