PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn339261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 251aa    MW: 28294.4 Da    PI: 5.5529
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn339261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-071662061055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++R +ri +++ +L+el+P+       K++ +++LekA+ Y+k Lq
  Achn339261 166 QNRQERISERLKTLQELVPNG-----SKVDLVTMLEKAIGYVKFLQ 206
                 69******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.623156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-6162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-10166213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.12E-8166210No hitNo description
SuperFamilySSF474596.28E-11166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-5166206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MALAKDRRPY DSHTGSPFGG SSLADQVSDI FNDHHKPETE EREGFAMTLS PSLSNTTPSR  60
TNSSDYIYRE AHSVINFKSE YNPLIHISGS LLSFERNDQS PKNPNPKIHQ QDDYSIWEEN  120
LIHGSNSSLL QEFNSVDQSS IQEFETQELA CSNKRLHTPD YFVALQNRQE RISERLKTLQ  180
ELVPNGSKVD LVTMLEKAIG YVKFLQLQVK VLATDEFWPV HGEKAPDLCQ VKEAIDAILS  240
SQKHTNSSSK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272414.31e-59PREDICTED: putative transcription factor bHLH086
RefseqXP_028079436.11e-59transcription factor bHLH83-like
TrEMBLA0A2R6PA441e-170A0A2R6PA44_ACTCH; Transcription factor bHLH086 like
STRINGVIT_14s0006g01470.t012e-63(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99862126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.12e-42RHD SIX-LIKE 1