PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn339461
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 158aa    MW: 17479.3 Da    PI: 4.4258
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn339461genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.82.4e-07628830
                HHHHHHHHHHHHHHHHHHHHHHH CS
      SRF-TF  8 nrqvtfskRrngilKKAeELSvL 30
                ++q  fs R++g++KKA+E S L
  Achn339461  6 KKQLHFSERLEGLFKKAKEASAL 28
                67889**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500668.844128IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MADDGKKQLH FSERLEGLFK KAKEASALHE KQSQNRAIRN SVSIPLEEQQ TQRTQLKDYG  60
RFIEKPVGLF NFGCDYSVQD FIGLGSESEF SYFASGDISS VFDDLVAVAE GEGEGGGAWL  120
SGRVSAVGDV KYSANVKEME SQDDVIKEFL KENLFDY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-