PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn340691
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family DBB
Protein Properties Length: 213aa    MW: 23222.4 Da    PI: 6.0795
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn340691genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.8e-07433534
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                 C+ +e+  +++fC  ++  lC+ C ++ H
  Achn340691  4 LCDVCESASAIIFCAADEAALCRACDEKVH 33
                7**************************998 PP
2zf-B_box25.92e-085491437
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Achn340691 54 PRCDICENAPAFFYCEIDGSSLCLQCDMIAHVGgkrtH 91
                79**************************9996544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.082147IPR000315B-box-type zinc finger
SMARTSM003362.6E-8147IPR000315B-box-type zinc finger
PfamPF006438.0E-6341IPR000315B-box-type zinc finger
CDDcd000213.90E-6345No hitNo description
SMARTSM003363.1E-95196IPR000315B-box-type zinc finger
PfamPF006432.6E-65491IPR000315B-box-type zinc finger
CDDcd000211.77E-65484No hitNo description
PROSITE profilePS501198.5465696IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MRTLCDVCES ASAIIFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLADP SIVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIAHVGGKRT HGRYLVLRQR VEFPGDKPGH VGGIGLEPGE  120
MDEIIREHKQ PPKPRMGEIQ QNHRLSAVSV LDANIDGGGN MNNKMIDLNA NPQRVYGQTS  180
NNQEHGMDVL SGDNQESASV VPVASFKREF DK*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028105100.11e-120B-box zinc finger protein 18
RefseqXP_028105163.11e-120B-box zinc finger protein 18
SwissprotC0SVM52e-83BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2R6RBW01e-156A0A2R6RBW0_ACTCH; B-box zinc finger protein
STRINGEOX978581e-113(Theobroma cacao)
STRINGcassava4.1_016111m1e-113(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-85DBB family protein