PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn340761

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C3H

Protein Properties

Length: 741aa MW: 82241.2 Da PI: 7.0024

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn340761	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.6e-06	144	168	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 lC+ ar+G tC+y d+C+F+H+ Achn340761 144 LCPEVARSGdpsTCRYNDKCRFSHD 168 7***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.038	139	169	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.197	144	170	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	24	180	205	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.798	183	208	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	3.7E-72	384	627	IPR013785	Aldolase-type TIM barrel
CDD	cd02801	8.15E-91	388	623	No hit	No description
SuperFamily	SSF51395	1.22E-61	388	701	No hit	No description
Pfam	PF01207	1.6E-50	391	650	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	472	490	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence Send to blast
MAEWSKAPDS SSGPPFCYFI KSPTKTLSTG RRRNLNRTGM DDGPTAELAG EEPKVSYESH 60 ETPSVVIVGG GVVQQTPEDL VAKAIAPVKR EFLLPPPIRP CSKDSNDVAS DATKSAPSNL 120 LKEKKSKRQL KRERLQEKKS VLHLCPEVAR SGDPSTCRYN DKCRFSHDIE AFKDQKPADL 180 EGDCPFLNNE GPCPYGLTCR FSGTHKDGLP AEAFNGQKKS PEMNGLNKDV QKLLWKNNMK 240 FPKADAQLKL LGLLGHMKSV QAKLSEEEEG DRTTPNRSIA ADENGGCEVA GDTNIKMDHS 300 PQPPEEDDCA GGTFASDELR PPKKAKSSVD ENHSRNELDN GIGKLKKDIE KSCSQNETGS 360 TADCIPAETD GSLKSHPREK KLIDFREKLY LAPLTTVGNL PFRRVCKVLG ADVTCGEMAM 420 CTNLLQGQAS EWALLRRHSS EDLFGVQICG AYPDTVTKTV ELIDQECTVD FIDINMGCPI 480 DIVVNKGAGS ALLMKPMRMK SVVQAASAIV DRPITVKVRT GYFEGRNRID SLIENIGQWG 540 ASAVTIHGRS RQQRYSKLAD WEYIYQCTRK APDALQVLGN GDVFSYLDWN THKSDCPELS 600 TCMIARGALI KPWIFTEIKE QRHWDISSGE RLNIMKDYVR FGLDHWGSDA KGVETTRHFL 660 LEWLSYTFRY IPVGLLDVIP QRLNWRPPSY FGRDDLETLM ASESASDWVR ISEMLLGKVP 720 AGFTFAPKHK SNAYDRAENG *

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence Send to blast

MAEWSKAPDS SSGPPFCYFI KSPTKTLSTG RRRNLNRTGM DDGPTAELAG EEPKVSYESH  60
ETPSVVIVGG GVVQQTPEDL VAKAIAPVKR EFLLPPPIRP CSKDSNDVAS DATKSAPSNL  120
LKEKKSKRQL KRERLQEKKS VLHLCPEVAR SGDPSTCRYN DKCRFSHDIE AFKDQKPADL  180
EGDCPFLNNE GPCPYGLTCR FSGTHKDGLP AEAFNGQKKS PEMNGLNKDV QKLLWKNNMK  240
FPKADAQLKL LGLLGHMKSV QAKLSEEEEG DRTTPNRSIA ADENGGCEVA GDTNIKMDHS  300
PQPPEEDDCA GGTFASDELR PPKKAKSSVD ENHSRNELDN GIGKLKKDIE KSCSQNETGS  360
TADCIPAETD GSLKSHPREK KLIDFREKLY LAPLTTVGNL PFRRVCKVLG ADVTCGEMAM  420
CTNLLQGQAS EWALLRRHSS EDLFGVQICG AYPDTVTKTV ELIDQECTVD FIDINMGCPI  480
DIVVNKGAGS ALLMKPMRMK SVVQAASAIV DRPITVKVRT GYFEGRNRID SLIENIGQWG  540
ASAVTIHGRS RQQRYSKLAD WEYIYQCTRK APDALQVLGN GDVFSYLDWN THKSDCPELS  600
TCMIARGALI KPWIFTEIKE QRHWDISSGE RLNIMKDYVR FGLDHWGSDA KGVETTRHFL  660
LEWLSYTFRY IPVGLLDVIP QRLNWRPPSY FGRDDLETLM ASESASDWVR ISEMLLGKVP  720
AGFTFAPKHK SNAYDRAENG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	1e-26	385	664	27	306	tRNA-dihydrouridine synthase B
6ei9_B	1e-26	385	664	27	306	tRNA-dihydrouridine synthase B
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Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028076441.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1
Swissprot	Q9T0J6	0.0	DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A2R6RBS0	0.0	A0A2R6RBS0_ACTCH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	VIT_03s0038g00870.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8039	19	23

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709]