PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn341231
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 235aa    MW: 27403.2 Da    PI: 9.5085
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn341231genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.11.8e-26124207186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 rW+k+ev+aLi++r+ +++++ +g  k + Weev+  ++  g++r++ +Ckekwen+nk+y++++e+ kk+ +++ +tcpyf++l+
  Achn341231 124 RWPKSEVQALITVRTALDHKFCKG-PKSASWEEVAVGLSNVGYSRNARKCKEKWENINKYYRRTTENGKKH-PDNGKTCPYFHELD 207
                 8**********************9.8999****************************************98.88899*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-19123207No hitNo description
CDDcd122031.59E-16123187No hitNo description
PROSITE profilePS500907.131124180IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTEPSSRKRK RKTRKNLELL LENLMRKVIQ KQEQMHNQLI EMVEKMERER IIREVAWQKQ  60
EIERVKKDEE TRSEEKSRSL ALISFIKDFL GHEIQIPKFG EASYFEKDTG EITKDLGCDS  120
CNKRWPKSEV QALITVRTAL DHKFCKGPKS ASWEEVAVGL SNVGYSRNAR KCKEKWENIN  180
KYYRRTTENG KKHPDNGKTC PYFHELDILY KNGLINPGNA SHSIKNENEG QECG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611RKRKRK
2614RKRKRKTRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028076499.11e-114trihelix transcription factor GT-2
TrEMBLA0A2R6PXB61e-169A0A2R6PXB6_ACTCH; Trihelix transcription factor GT-2 like
STRINGXP_010243939.15e-87(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128841620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.12e-50Trihelix family protein