PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn343671
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 393aa    MW: 44343.3 Da    PI: 7.0795
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn343671genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1676.6e-52201601128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                 lppGfrFhPtdeel+++yL+ kv + ++     i+evd++++ePwdLp              +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatg
  Achn343671  20 LPPGFRFHPTDEELITFYLASKVFNGTFCG-VDIAEVDLNRCEPWDLPDpedkqfvlccadVAKMGEREWYFFSMRDRKYPTGLRTNRATGAGYWKATG 117
                 79*************************877.34**************955789999998875566999******************************* PP

         NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 kd+ev+s+  +g l g+kktLvfykgrap+gekt+Wvmheyrl
  Achn343671 118 KDREVYSSgsSGGLLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 160
                 *******9777778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6013182IPR003441NAC domain
PROSITE profilePS5100558.34220182IPR003441NAC domain
PfamPF023658.3E-2821160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MLDVEDVLSE LNEDINEQGL PPGFRFHPTD EELITFYLAS KVFNGTFCGV DIAEVDLNRC  60
EPWDLPDPED KQFVLCCADV AKMGEREWYF FSMRDRKYPT GLRTNRATGA GYWKATGKDR  120
EVYSSGSSGG LLGMKKTLVF YKGRAPRGEK TKWVMHEYRL DGHFSYRHMS KEEWVICRIF  180
RKKGEKKNPF YQGQTHLLEA ASSPPTMGSL APLLETQSHN PTQALQNHPF PIHHHQDSDL  240
KTLTNQVFPL PSFSPTPNKE GMNTNYHHHP SPSMLFKSLV SHQVCTLKEQ TTTVPKQCKT  300
EAKFSPFHQL PDANLRWLDR IQYGPHANPT LFLGMDCGMM GFSSATTDTT TTVATPLSEM  360
STSIAFNKAC IQTLVNPPIR SSVTGESWPL DL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-4811853171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018687.21e-163PREDICTED: protein CUP-SHAPED COTYLEDON 3 isoform X2
RefseqXP_017981594.11e-163PREDICTED: protein CUP-SHAPED COTYLEDON 3 isoform X1
RefseqXP_017981595.11e-163PREDICTED: protein CUP-SHAPED COTYLEDON 3 isoform X3
TrEMBLA0A2R6RMA10.0A0A2R6RMA1_ACTCH; Protein CUP-SHAPED COTYLEDON 3 like
STRINGEOY159121e-163(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.15e-90NAC family protein