PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn344551

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

G2-like

Protein Properties

Length: 188aa MW: 21533.9 Da PI: 6.5184

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn344551	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.1	8e-28	82	135	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prl Wtp LH++Fv+a+e+LGG++kAtPk il+lm+vk L+++hvkSHLQ Rl Achn344551 82 PRLWWTPHLHHSFVHAIEKLGGQDKATPKLILQLMDVKELSIAHVKSHLQEKRL 135 8*************************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.1E-26	78	137	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-21	82	136	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.36E-13	82	138	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSEGMEIQDD KKKERNEEQH ENGSSSVSSQ KFSSFDLNEE ANNSEDDDCN KKEDLANGNR 60 TTLREGNERK TTTRQYVRSN MPRLWWTPHL HHSFVHAIEK LGGQDKATPK LILQLMDVKE 120 LSIAHVKSHL QEKRLKHEER LLDLKLRLSE SVGNNEERPT YGNNMQEINT VLSLSLSPYS 180 SSQTSKI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-13	83	134	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-13	83	134	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-13	83	134	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-13	83	134	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-13	83	134	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-13	83	134	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-13	83	134	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-13	83	134	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-13	83	134	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-13	83	134	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-13	83	134	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-13	83	134	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028107181.1	3e-49	two-component response regulator ARR12-like
TrEMBL	A0A2R6PY37	1e-78	A0A2R6PY37_ACTCH; Myb family transcription factor
STRING	POPTR_0011s07270.1	5e-43	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5433	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	1e-27	G2-like family protein