PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn344611
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 263aa    MW: 29080.7 Da    PI: 8.8955
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn344611genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-1175121354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L +++  +k+L
  Achn344611  75 KNHSEAERRRRERINAHLSTLRGLVPCT-----EKMDKAALLAEVISQVKQL 121
                 58*************************8.....8************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.53572121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-975121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-1375124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1375129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-1178127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2606.0E-5159208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGSYFWDSNT SNTSNYSGIF GPNSGNLGGF SGNLRGGSVS QSLVLDSERG EIVKAPARVG  60
KKHEISEENI KAALKNHSEA ERRRRERINA HLSTLRGLVP CTEKMDKAAL LAEVISQVKQ  120
LKKTTTETSE GLLIPMDTDE VRVESQHKDG DGIFSFRASL CCDYRPELLS ELKQALKALH  180
LNMVKAEIST LGSRVKYVFV FTRREEMNSD NSEECQILVN SVHRSLSTIL DKVSSAAEYS  240
PRTTLPNKRR RISFFDSSSS SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085ERRRRE
2247251KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028092033.11e-122transcription factor bHLH30-like
SwissprotQ9S7Y18e-32BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2R6PY240.0A0A2R6PY24_ACTCH; Transcription factor bHLH30 like
STRINGXP_004295576.19e-98(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67302230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-33bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]