PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn344651
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 227aa    MW: 24894.7 Da    PI: 4.8005
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn344651genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.73e-321490278
         TCP  2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssaseceaess 78
                +g+kdrhsk++T++g+RdRR Rl a++a++f+d+qd+LG d+++++i+WL+++ak ai++l ++ ++++ +e  +e++
  Achn344651 14 TGRKDRHSKVCTARGPRDRRLRLAANTAIQFYDVQDRLGCDRPGEAIDWLMKEAKSAIDALDKSaDQNPDQEL-DEHH 90
                689*************************************************************433333333.2222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-291481IPR005333Transcription factor, TCP
PROSITE profilePS5136929.3631674IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVEVQGGRIL RSITGRKDRH SKVCTARGPR DRRLRLAANT AIQFYDVQDR LGCDRPGEAI  60
DWLMKEAKSA IDALDKSADQ NPDQELDEHH RVGISNSGYF GEEPINSLGF FGIESLTNAV  120
MSTEFDQHLS GISSASSHFG TILGEEQLFS QGGPLQSSYS PAFRALMSPQ NCDPILPQAI  180
SPCLDPGNSL QGDGFSRFFV SPGIQGEEDR HNPVPNMPCF LNYQDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-172174154Putative transcription factor PCF6
5zkt_B2e-172174154Putative transcription factor PCF6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028081049.13e-55transcription factor TCP13-like
TrEMBLA0A2R6PXZ71e-167A0A2R6PXZ7_ACTCH; Transcription factor like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.11e-36TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3