PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn344781
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 848aa    MW: 93654.5 Da    PI: 4.642
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn344781genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-07331350525
                 --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                 +C+ffa+ G+C  G++C+F H
  Achn344781 331 ICDFFAK-GWCIKGNSCRFLH 350
                 8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.7E-4326352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.44E-6326350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408326353IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-5331350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MDTDDDDVEY EEIEEEVEIE EEVEEEVEEE FEEEEEEEEE EEIGEEEEEE IVEEAFSDSP  60
IGGDRNANMF GEFITPHKLP SKDPSYEIAT LSASVLKGRA VLKHQGPLEP KLKARSEACA  120
SLKLSASCRN VSQDMESKGQ EEHSGLGSSD PEKSVAYLSS DTLAVEGGIV NPKSSCASEE  180
IQKGESHIDI DEPEYREIGK HVVVAEDGGF QESAGDMKDS VAFPDRGTPK DDDANNDIKA  240
SLCDNCIVIA TKPLSVSGKE ATGTISIRDE FSEEANLVSP NTESKKMGAQ SREDINQEST  300
SFSRLAVPQI RPRSLSPVAE LNNGNKRAAV ICDFFAKGWC IKGNSCRFLH IKDCANITSQ  360
KFEGDVAFLD EKSELQADGG VRDGSERSRS PFSLERTPSR EHGESPRRHQ LLEKHKISSL  420
QRDYLSHAVS PDSLQSPIYK DIARPISSFK NVGGENLKQS WSSDDHPTYR DSCFPGLSPS  480
LPTIGIFPSQ NISSLTRSSF SFGSLDKDPL GAQKFPGSVG EYLASGSASR LQSSSPFSGS  540
ESGNLSLKNV SGDPLHIAGH RTKILSNDWE PSVPFRSSFL ISQNLSSPGS LYDPIRDSIE  600
QPNFGDGFSK SSSRPETSTN TYLSINSDPV LKRTLGPEFG LGKQPSFSFG HHILHDDMSD  660
KKVQGKNLFT TEGENVNIFH AEQQSTLYKE GKVLSPSRLK DIPIANKTHF DSGSSIELDV  720
RRQKMDLKID SGRQNHEMDD DLKTDGEQKE SKALRNFRAA LVDFVKELVK PFWREGQLSK  780
DAHKIIVRKS VDKVLSTLQP HQIPSAEESI KQYLSASEPK ISKLVESTWM KRNLPRDLVF  840
NFVSKDP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028074784.10.0protein FRIGIDA-ESSENTIAL 1 isoform X1
TrEMBLA0A2R6QA720.0A0A2R6QA72_ACTCH; Protein FRIGIDA-ESSENTIAL like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30042122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-19C3H family protein