PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn345501

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HD-ZIP

Protein Properties

Length: 167aa MW: 19323.1 Da PI: 8.3815

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn345501	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.6e-19	16	68	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++q+ Le++F+ n++++ ++ +LA+klg++ +qV vW+qN+Ra++k Achn345501 16 KKRLTQDQVMLLETCFNFNNKLDLGQKLQLAQKLGVPPKQVAVWYQNKRARWK 68 5679************************************************9 PP
2	HD-ZIP_I/II	103.6	1.6e-33	16	105	3	92
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k+rl+++qv lLE++F+ ++kL+ +K +la++Lg+ p+qvavW+qn+RAR+k++ lE+++++Lk++++++ +enerLe+e e+L+++++ Achn345501 16 KKRLTQDQVMLLETCFNFNNKLDLGQKLQLAQKLGVPPKQVAVWYQNKRARWKSQTLEEKCKSLKHRLESVLKENERLEREIERLKQDMT 105 9*************************************************************************************8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.0E-17	7	70	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.657	10	70	IPR001356	Homeobox domain
SMART	SM00389	2.7E-15	12	74	IPR001356	Homeobox domain
CDD	cd00086	3.19E-13	14	70	No hit	No description
Pfam	PF00046	4.9E-16	17	68	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.8E-18	19	56	IPR009057	Homeodomain-like
PRINTS	PR00031	5.4E-5	41	50	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	45	68	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.4E-5	50	66	IPR000047	Helix-turn-helix motif
Gene3D	G3DSA:1.10.10.60	6.2E-4	57	102	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MDYFQSQTLK HPLKCKKRLT QDQVMLLETC FNFNNKLDLG QKLQLAQKLG VPPKQVAVWY 60 QNKRARWKSQ TLEEKCKSLK HRLESVLKEN ERLEREIERL KQDMTLVCNI PSLSSSCDEV 120 GSSSLKFHGQ NHHHMDKEIY ACFIGGEGGE FERPEGHNFF DPSISL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800499.1	5e-64	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A2R6PY03	1e-120	A0A2R6PY03_ACTCH; Homeobox-leucine zipper protein like
STRING	XP_009800499.1	2e-63	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-16	homeobox protein 52