PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn345551

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 213aa MW: 23791.3 Da PI: 7.3264

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn345551	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.5	1.9e-17	133	211	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 + n+YA ++GF + s+ ++s+ +g++t+r+f C k+ + +e ++++ ++gCka+++v+k+k +gkw vtkle eH+H++ Achn345551 133 YHNAYAIRAGFVIGASNCYRSSLDGSVTSRKFLCDKHERLRE----------NNETREIGCKAMIMVRKDKkSGKWLVTKLEREHSHPV 211 679*****************************98654444..........566689*******999*************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-15	133	211	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MDLVLILVSL ICVHTSVKAS TFKDSRAEVS MKKLFSLCKR PGVLPGDHPE VAKVDLVPNE 60 HDHDGGICVV PELLQPPRDV LGRDMPVNFS TNADIDNKVF EGTGDMIHLY DNERDLILHK 120 TDGHVEPYIG MVYHNAYAIR AGFVIGASNC YRSSLDGSVT SRKFLCDKHE RLRENNETRE 180 IGCKAMIMVR KDKKSGKWLV TKLEREHSHP VG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028119173.1	2e-36	protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_028119174.1	2e-36	protein FAR1-RELATED SEQUENCE 6-like isoform X2
Refseq	XP_028119175.1	2e-36	protein FAR1-RELATED SEQUENCE 6-like isoform X2
TrEMBL	A0A2R6QJP0	5e-39	A0A2R6QJP0_ACTCH; Protein FAR1-RELATED SEQUENCE like (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	3e-18	FAR1 family protein