PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn347651
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 313aa    MW: 33056.4 Da    PI: 8.3234
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn347651genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08108132226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 kt+ C+ +     C++Gd+C+FaHg
  Achn347651 108 KTRMCNKYNTAEGCRFGDKCHFAHG 132
                 8***********************9 PP
2zf-CCCH38.22.5e-12278302126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC +fa+ GtC +G+rC+FaHg
  Achn347651 278 FKTKLCENFAK-GTCTFGERCNFAHG 302
                 69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.1744967IPR000571Zinc finger, CCCH-type
PfamPF146080.965364No hitNo description
SuperFamilySSF902294.45E-8104137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-14104138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019106134IPR000571Zinc finger, CCCH-type
SMARTSM003560.021106133IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-5108132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.101.0E-14176250IPR004088K Homology domain, type 1
SuperFamilySSF547911.52E-13177252IPR004088K Homology domain, type 1
SMARTSM003225.5E-10181251IPR004087K Homology domain
PROSITE profilePS5008413.712182246IPR004088K Homology domain, type 1
PfamPF000133.8E-10184248IPR004088K Homology domain, type 1
CDDcd001051.02E-12184246No hitNo description
Gene3DG3DSA:4.10.1000.101.2E-15273308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-9276308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.009277304IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7277303IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-10278302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MKRAESFSGQ EKKKDVLDYL SDGTDTENMR VSLSEVLLSS IFAALDGVWS TAGCQFGEGC  60
HFLHYVPGGI KTVTQMLGSN PALPSAPRNP VAPPPPSFPD GSSPPTIKTR MCNKYNTAEG  120
CRFGDKCHFA HGDWELGKPM MPSYEDPRGM GLMAGGRFSG RMEPTPAAAP PNPVSAPGFG  180
ASATAKISVD GSLAGAIIGK GGVNSKQVCR VTGAKLSIRD HESDPSLKNI ELEGTFDQIR  240
QASAMVRELI VNISSASGAP MRYNPGKQQG SAPPANNFKT KLCENFAKGT CTFGERCNFA  300
HGADDLRKQP GV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022866288.11e-132zinc finger CCCH domain-containing protein 14-like
RefseqXP_027089825.11e-132zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ31e-94C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A2R6PQU50.0A0A2R6PQU5_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_008243620.11e-127(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-58C3H family protein