PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn348261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 434aa    MW: 48107.1 Da    PI: 4.7215
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn348261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.6e-10114154446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      WT+ E +ll++ v ++G + W+++a+ +  ++t  +c+s++ +
       Achn348261 114 WTEAETLLLLESVLKHGDN-WDLVAENVK-TKTKADCISKLIQ 154
                      *****************77.********9.*********9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-6106151IPR009057Homeodomain-like
PROSITE profilePS5129316.834109160IPR017884SANT domain
SuperFamilySSF466893.51E-9109163IPR009057Homeodomain-like
SMARTSM007172.0E-7110158IPR001005SANT/Myb domain
PfamPF002491.3E-9113154IPR001005SANT/Myb domain
CDDcd001671.08E-6114151No hitNo description
PfamPF164951.9E-21336412IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MVLIIVIHLL DNALLEKFVV LEDSGSDNGR GMEGNGFDLP PLASYRDVYT ERKGTICGNC  60
KQRCESGHYE YTKEGNFIIC VKCFKNGNYG ENKSVDDFKF IDCIPNSRNH EAVWTEAETL  120
LLLESVLKHG DNWDLVAENV KTKTKADCIS KLIQLPFGDL MLGSTHSRGK LWDNDGNTSI  180
VQQGQLPSSE AHPQENIKTE DQCHDVENER NQNGDAETQV PPLKRKRTIS PSDTGNALMK  240
QVALISSMVD PHIAASAAEA AVKALCDECQ CPREIFDGDA KEGEELGSSP QNNEKERSLQ  300
VDGSEVEERP TKLESQGTSS EKNAIPLTFR MRAATATALG AAAARAKLLA DQEDREIECL  360
AATIIETQLK KLQCKIKHID DLELIMEKEY TQLEELKESI VAEQMNVLQR VFSTGISRWR  420
DHTSVKPQVD SVL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028122558.10.0SWI/SNF complex subunit SWI3A
TrEMBLA0A2R6PDG70.0A0A2R6PDG7_ACTCH; SWI/SNF complex subunit SWI3A like
STRINGVIT_17s0000g00990.t011e-152(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA985833