PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn348741
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 178aa    MW: 20040.1 Da    PI: 9.7724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn348741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.1e-051021411255
                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 RR++i +++  L+ l+P +    +k   Ka iL + + Y++sLq
  Achn348741 102 RREKISEKMKMLQGLVPGC----DKVTGKAIILDEIICYVQSLQ 141
                 9*****************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.85190140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0068101146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-12101157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-6102145No hitNo description
Gene3DG3DSA:4.10.280.102.1E-13103155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAKSKVNYNL DSVDTSVQQP LAKQFVDPGP NSSRWGARCD LCSKGVSLHR LDQDAREVKQ  60
KKQKRNNGVI KDDKEKKPKI RKKNHLKKVG EDQVPTGYVH VRREKISEKM KMLQGLVPGC  120
DKVTGKAIIL DEIICYVQSL QNQVEFLSMK LASLNPMFYD FGMDLDETMV TPEGNST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015578685.19e-47transcription factor bHLH137
TrEMBLA0A2R6PSG04e-67A0A2R6PSG0_ACTCH; Transcription factor bHLH137 like
STRINGXP_002511110.12e-45(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-33bHLH family protein