PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn349691
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 249aa    MW: 28329.9 Da    PI: 8.6866
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn349691genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.12.9e-52141381128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeelv++yLk+kv + +l++ ++i+evd++k++PwdLp     +e+e yfFs+++ ky++g+r+nrat sgyWkatg dk+++++ +++
  Achn349691  14 LPPGFRFHPTDEELVDQYLKRKVYSCPLPA-SIIPEVDVCKSDPWDLP---GDSEEERYFFSTKEAKYPNGNRSNRATGSGYWKATGIDKKITTSrGNQ 108
                 79****************************.89***************...3467899**********************************9985777 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +vg+kktLvfy+g+ p+g++tdW+mheyrl
  Achn349691 109 VVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 138
                 8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-6110164IPR003441NAC domain
PROSITE profilePS5100558.77414164IPR003441NAC domain
PfamPF023658.2E-2815138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDEELVDQ YLKRKVYSCP LPASIIPEVD VCKSDPWDLP  60
GDSEEERYFF STKEAKYPNG NRSNRATGSG YWKATGIDKK ITTSRGNQVV GMKKTLVFYR  120
GKPPHGSRTD WIMHEYRLVD GEPPKKNTTQ SLAENWVICR IFLKKRSTRN EEDHENTKPH  180
NCDKVKFLGN ITMPVFYDFL ANDRADLNLV PASSSSGSSG VTEVFPHEPD DREESSSCNS  240
FSSFRRKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-541216915170NO APICAL MERISTEM PROTEIN
1ut4_B7e-541216915170NO APICAL MERISTEM PROTEIN
1ut7_A7e-541216915170NO APICAL MERISTEM PROTEIN
1ut7_B7e-541216915170NO APICAL MERISTEM PROTEIN
4dul_A7e-541216915170NAC domain-containing protein 19
4dul_B7e-541216915170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028076724.11e-136NAC domain-containing protein 83-like
SwissprotQ9FY931e-101NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2R6QRG30.0A0A2R6QRG3_ACTCH; NAC domain-containing protein
STRINGcassava4.1_014491m1e-134(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-99NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]