PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn350081
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 236aa    MW: 25735.3 Da    PI: 7.3922
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn350081genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-0584106123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C + F+++  L  H++ H
  Achn350081  84 FECHYCRRNFPTSQALGGHQNAH 106
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.23E-680112No hitNo description
PfamPF139127.8E-684108IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.32384111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MKYDYSNSSL MDNLERETHD FMNVESFSQL PFIRPPPAKE NPPAAAAIRL FGIEFGGGGG  60
AAATDHDSDS SSKDGGDSGG GRKFECHYCR RNFPTSQALG GHQNAHKRER QHAKRAHLHS  120
AAAAYHRPLP YYSWAPAGGN VNIYDNVPRF YGGDYVRNSS YSFPATINGS PMGLWQNIPT  180
VQSSGAVFNC DRSMYNHHSF PLFSSGELKP SGSQSLFGCE ANATVQDHVS LDLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9579717e-31EU957971.1 Zea mays clone 1638742 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459255.12e-65zinc finger protein 8
TrEMBLA0A2R6QRN81e-166A0A2R6QRN8_ACTCH; Zinc finger protein like
STRINGPOPTR_0006s20970.13e-65(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14731526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.19e-27C2H2 family protein