PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn350241
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 142aa    MW: 15197.8 Da    PI: 9.1407
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn350241genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-05729123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ykC+ C+++F++   L  H++ H
  Achn350241  7 YKCTLCPRTFTSGQGLAGHMNAH 29
                9*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.69E-7436No hitNo description
PfamPF139128.0E-7630IPR007087Zinc finger, C2H2
SMARTSM003550.01729IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138734IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MERNKVYKCT LCPRTFTSGQ GLAGHMNAHR YDHVYQSERS PNLRLPSNPA PESTRPKGAT  60
GATYYPAPAV QAGFGGSGLR PPPPVNHSLG FARFMGGSQS SSERTVTNPN HRVAAKGGED  120
EEDVTSETKV EVDTELRLGR G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028116638.12e-21transcriptional regulator SUPERMAN-like
TrEMBLA0A2R6QGZ33e-17A0A2R6QGZ3_ACTCH; Phospho-N-acetylmuramoyl-pentapeptide-transferase
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-07C2H2 family protein