PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn350701
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 265aa    MW: 30268.3 Da    PI: 8.564
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn350701genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s
  Achn350701  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59
                79***********************************************96 PP
2K-box63.67.6e-22871441269
       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                 a + s+qqe+ kLk ++e Lqr+qR+llGe+L++L+ +eL++Le+qL+ slk+iRs +
  Achn350701  87 ALELSSQQEYLKLKGRYEALQRSQRNLLGEELGPLNSQELESLERQLDMSLKQIRSSR 144
                 555689*************************************************976 PP
3K-box16.34e-071631916997
       K-box  69 KnellleqieelqkkekelqeenkaLrkk 97 
                  n+++l+q+ +lq+ke++l+e+nk+L+++
  Achn350701 163 ENQYMLDQLTDLQRKEHALNEANKTLKQR 191
                 589***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.487161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-33275IPR002100Transcription factor, MADS-box
CDDcd002652.46E-45276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-32323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.21689204IPR002487Transcription factor, K-box
PfamPF014869.3E-2291192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGKLYEFCST  60
SSMLKTLDRY QKCNYGAPEP NVSAREALEL SSQQEYLKLK GRYEALQRSQ RNLLGEELGP  120
LNSQELESLE RQLDMSLKQI RSSRVLNLSF DIILLSPVKN YNENQYMLDQ LTDLQRKEHA  180
LNEANKTLKQ RLWGDSQVNS LQWNPSAQDH VDYSRQPAQR QGGEAFFHPL DCEPTLQIGY  240
QQNDPITVVG AGPSLNNYMA GWLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-39751921101Developmental protein SEPALLATA 3
4ox0_B3e-39751921101Developmental protein SEPALLATA 3
4ox0_C3e-39751921101Developmental protein SEPALLATA 3
4ox0_D3e-39751921101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1133620.0HQ113362.1 Actinidia chinensis SEP3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096723.11e-149agamous-like MADS-box protein AGL9 homolog isoform X2
SwissprotQ8LLR01e-145MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBLA0A2R6QRE11e-175A0A2R6QRE1_ACTCH; Agamous-like MADS-box protein
STRINGSolyc05g015750.2.11e-146(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-119MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]