PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn351781

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 203aa MW: 22891 Da PI: 9.4987

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn351781	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.4	2.2e-10	34	82	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH....HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk....qcksrwqky 47 r +WT eE++++++a +++ + Wk+I +g +t q++s+ qky Achn351781 34 RESWTDEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIqfylQIRSHAQKY 82 789***************77.*******.888852222688888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.22E-15	28	88	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.627	29	87	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-6	32	88	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-16	32	85	IPR006447	Myb domain, plants
SMART	SM00717	4.2E-6	33	85	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-8	34	82	IPR001005	SANT/Myb domain
CDD	cd00167	1.51E-7	36	83	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MNSSSSNSQP MANSTPSDSS GKKARKPYTI TKSRESWTDE EHDKFLEALQ LFDRDWKKIE 60 DFVGSKTVIQ FYLQIRSHAQ KYFLKVQKTG TIAHVPPPRP KRKAVHPYPQ KATKNGIPDF 120 SEVYGFIGSV FDPDTKGHVQ KLKEMDPINF ETVLLLMRNL TMNLSSPDFD PIKEVLSSYD 180 TNSKTVGLFA GNVVKNENEL SC*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019053626.1	1e-107	PREDICTED: protein REVEILLE 8 isoform X2
Swissprot	Q8RWU3	3e-56	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	A0A1U8Q6F9	1e-106	A0A1U8Q6F9_NELNU; protein REVEILLE 8 isoform X2
STRING	EMJ07032	3e-95	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA998	24	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	3e-58	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]