PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn351801
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 466aa    MW: 51254 Da    PI: 9.0876
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn351801genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.5e-30196252360
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 D ynWrKYG+K+vkgs++ rsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Achn351801 196 DRYNWRKYGKKQVKGSDYVRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHNHSK 252
                 99**************************************.***************85 PP
2WRKY86.32.8e-27387443259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  Dg++W+KYGqK vkg+++p sYYrC+  +C+v+k+ver+++dpk++++tYeg+Hnh+
  Achn351801 387 GDGCHWKKYGQKIVKGNPYP-SYYRCSNLNCNVRKHVERASDDPKAFITTYEGKHNHD 443
                 59******************.9***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-25192253IPR003657WRKY domain
SuperFamilySSF1182901.28E-22193253IPR003657WRKY domain
SMARTSM007742.1E-31194252IPR003657WRKY domain
PfamPF031062.2E-22196250IPR003657WRKY domain
PROSITE profilePS5081121.046196253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-28375445IPR003657WRKY domain
SuperFamilySSF1182903.14E-24380445IPR003657WRKY domain
PROSITE profilePS5081129.493381445IPR003657WRKY domain
SMARTSM007749.3E-31386444IPR003657WRKY domain
PfamPF031066.7E-22388443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MEVNKAERIV IVKPVPSRPT CSSFRSVSEL LAGAINSSPS NACFATAVSA IRPKTVRVKP  60
MANRSPVGML SSQTEVSSAV SYSSDKVLNS DSKANVLYRP LAKVVSKTTL SLSENLGNSN  120
ICHQQALAQV EASAQPPSQF KYHFRSDLSP NDLHQNFSPL SEREKKNEPS KMASENMEDD  180
QKCLPFNHNG DRYSYDRYNW RKYGKKQVKG SDYVRSYYKC THPNCPVKKK VERSLDGQIA  240
EIVYKGEHNH SKPQPVRRNT SGGQGNIFIS DGTGQDTNNP SLSNQLNERI DGSEGRTENQ  300
IAVGLSGKGL LSYDPVAARV SKFNVGIPEN SCGLSGDYEE GSKKGLEEAD EPRSKRRKNE  360
NELGISGGEV QAQGALVQSN IDSEIIGDGC HWKKYGQKIV KGNPYPSYYR CSNLNCNVRK  420
HVERASDDPK AFITTYEGKH NHDMPIRNTV GSEPDSQAAT SKDKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-27196445877Probable WRKY transcription factor 4
2lex_A3e-27196445877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028072625.10.0WRKY transcription factor 44-like
RefseqXP_028072626.10.0WRKY transcription factor 44-like
RefseqXP_028072627.10.0WRKY transcription factor 44-like
TrEMBLA0A2R6PWR20.0A0A2R6PWR2_ACTCH; WRKY transcription factor
STRINGVIT_08s0040g03070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99512227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-95WRKY family protein