PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn352831
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 183aa    MW: 20166.4 Da    PI: 5.5476
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn352831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260682.1e-21774164
      DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeee...redamsslvye 64
                +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp +    +e+a+++    
  Achn352831  7 PCGACKFLRRKCVRGCVFAPYFCHEQgASHFAAIHKVFGASNVSKLLAHLPAQLaslKEQAARTFSTS 74
                7*************************89**********************887532356676666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.4436109IPR004883Lateral organ boundaries, LOB
PfamPF031959.4E-20776IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGASHFAAI HKVFGASNVS KLLAHLPAQL  60
ASLKEQAART FSTSANPSER FNGKFPNYPQ DVQSWFQCET SSTMPQLDLN ILSGNFGNNP  120
YFENGLLNPN SFPMIPEENA SFSSFEEASQ SMDSIDLRTN GQWPFQDDDN ELQSMAFGYV  180
QH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-18357760LOB family transfactor Ramosa2.1
5ly0_B1e-18357760LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263533.14e-73PREDICTED: LOB domain-containing protein 29
TrEMBLA0A2R6QSB51e-125A0A2R6QSB5_ACTCH; LOB domain-containing protein
STRINGVIT_07s0005g03020.t012e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84462230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.15e-36LBD family protein