PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn353411
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 309aa    MW: 32732.2 Da    PI: 8.9709
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn353411genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.91.6e-07265289630
                 HHHHHHHHHHHHHHHHHHHCTSCCC CS
         HLH   6 nerErrRRdriNsafeeLrellPka 30 
                 +++Er RR riN ++ +L+el+P++
  Achn353411 265 SIAERDRRTRINGKLKKLQELVPNL 289
                 689*********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.674259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-6262293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-5263294No hitNo description
Gene3DG3DSA:4.10.280.107.4E-6264290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-5265289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGPSGLIRYG SAPGSFLSTA VDSVVGRHTR DFSALGSSSP HLLRHFYDAD TSSATSDPKK  60
PNKPQTAPYD SNEIAFGSGE FSTARINLNS KSSASSGGGG SLLRQSSSPA GLLNHLASSA  120
AASNGFPVTR GMGSYNSREA SDNGHGISRL ASQLSFTRQD SLSHIPEESE NGHKKAAHSY  180
ATASFGTVSW DDANAVVFSA SPGKRAKTIG GGDAHCLNTV ESQFQFSLSE TDLEMATTEN  240
LLQIPQDAVA CKIRAKRGFA THPRSIAERD RRTRINGKLK KLQELVPNLE KKLKDELEHC  300
TCGCKQTT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028106226.11e-110transcription factor bHLH128
TrEMBLA0A2R6S0B10.0A0A2R6S0B1_ACTCH; Transcription factor bHLH128 like
STRINGcassava4.1_010829m4e-93(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-54bHLH family protein