PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn354091
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 152aa    MW: 17484.2 Da    PI: 8.015
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn354091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.3e-31252151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien + rqvtfskRrng+lKKA+ELSvLCda+vavi+fs++g+lye+ss
  Achn354091  2 KRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVAVIVFSQNGRLYEFSS 52
                79***********************************************96 PP
2K-box33.81.4e-121091433569
       K-box  35 qRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                 +R++lG+dL+s+s++eL ++ +qLe+sl++iR++K
  Achn354091 109 LRKILGQDLGSCSVEELLEIDSQLERSLRNIRARK 143
                 79********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002651.61E-39165No hitNo description
SMARTSM004322.1E-32153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.931154IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-32180IPR002100Transcription factor, MADS-box
PfamPF003193.5E-28350IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-181631IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-183152IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.57375151IPR002487Transcription factor, K-box
PfamPF014863.6E-10109143IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MKRIENPTSR QVTFSKRRNG LLKKAYELSV LCDAQVAVIV FSQNGRLYEF SSSNMQKMID  60
RYSKYADVKI NSPEIEQYEE LLLLFPNLFL SLNNNLVQVL FPNFVSGCLR KILGQDLGSC  120
SVEELLEIDS QLERSLRNIR ARKVLEFLIE D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-183671074MEF2 CHIMERA
6bz1_B3e-183671074MEF2 CHIMERA
6bz1_C3e-183671074MEF2 CHIMERA
6bz1_D3e-183671074MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP4071541e-131KP407154.1 Actinidia chinensis SOC1h (SOC1h) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022774331.11e-55MADS-box protein AGL42-like
SwissprotQ9FIS11e-45AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A2R6RSY82e-71A0A2R6RSY8_ACTCH; MADS-box protein
STRINGEOY230411e-51(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.44e-46AGAMOUS-like 42