PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn354611

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 312aa MW: 36462.8 Da PI: 6.9621

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn354611	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.2	4.6e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeelv++yL++kv+ ++++l +vik+vd+yk+ePwdL++ ++ +e++ ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s k Achn354611 7 VPPGFRFHPTDEELVDYYLRRKVTCRRIDL-DVIKDVDLYKIEPWDLQElcRIGTEDQsEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS-K 103 69**************************.9***********954555555445**********************************.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 + l+g++ktLvfykgrap+g+k dW+mheyrle Achn354611 104 HDLIGMRKTLVFYKGRAPNGQKLDWIMHEYRLE 136 899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-56	5	140	IPR003441	NAC domain
PROSITE profile	PS51005	54.723	7	153	IPR003441	NAC domain
Pfam	PF02365	2.1E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRRKVT CRRIDLDVIK DVDLYKIEPW DLQELCRIGT 60 EDQSEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKLDWIM HEYRLETDEN GTPQASISIL FKKRLPTMRK VSEHDSPIWY DDQVSFMPDL 180 DSPKQNSHPN NYLPYHHHHH HPYPCKKELD LQYPNPNQGH FFNLPFLERP KLLQNAPPTM 240 MAAFGGGLSS SLTQEDQHNL NSAYGSNFSD QVTDWRVLDK FVASQLSQED IPKENDRYPN 300 EVNTFHPCDN Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-47	6	135	14	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028122247.1	1e-172	NAC domain-containing protein 7-like
Swissprot	F4HYV5	1e-116	NAC26_ARATH; NAC domain-containing protein 26
TrEMBL	A0A2R6RT32	0.0	A0A2R6RT32_ACTCH; NAC domain-containing protein
STRING	EOY22909	1e-158	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-107	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]